PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg15702g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 136aa    MW: 14630.6 Da    PI: 10.7884
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg15702g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64e-192961133
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                              C+ CgttkTplWR gp g+k+LCnaCG++ rkk
  Niben101Ctg15702g00001.1 29 CADCGTTKTPLWRGGPAGPKSLCNACGIKSRKK 61
                              *******************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-142375IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.6372359IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-122363No hitNo description
CDDcd002028.06E-122863No hitNo description
Gene3DG3DSA:3.30.50.102.7E-152861IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
PfamPF003205.1E-172962IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVDLSDKGIR SEEMNSETSS PERNDIKTCA DCGTTKTPLW RGGPAGPKSL CNACGIKSRK  60
KIRALLGLNK EKKSKKSMAF GNKSIGLQHQ SCNSSSNSSS GDSRSSNFGK KTVSSSLKSK  120
VFPFGREVIL QKPRSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768393.12e-62PREDICTED: GATA transcription factor 15-like isoform X1
RefseqXP_016486367.12e-62PREDICTED: GATA transcription factor 15-like
TrEMBLM1C5G53e-50M1C5G5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000602417e-48(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.14e-24GATA transcription factor 17